Peg Board Slides. Use peg board slides to store your tools vertically under the counter. Those small holes allow you to select specific areas for each hook or basket and ensure you have enough room for each item.
Hang Jars Under Shelves. Screw the jar lids into the wooden shelf that sits above the work top, and then screw the jar onto the mounted lid. Keep nails, screws and other small items out of the way and pretty organized. http://hative.com/clever-garage-storage-and-organization-ideas/